DreEX0052560 @ danRer10
Exon Skipping
Gene
ENSDARG00000018270 | olfm1a
Description
olfactomedin 1a [Source:ZFIN;Acc:ZDB-GENE-040718-194]
Coordinates
chr5:64071393-64078217:+
Coord C1 exon
chr5:64071393-64071548
Coord A exon
chr5:64077520-64077578
Coord C2 exon
chr5:64077998-64078217
Length
59 bp
Sequences
Splice sites
3' ss Seq
TTTCATTTTCTTGCTTGCAGGGC
3' ss Score
10.8
5' ss Seq
AGTGTAATC
5' ss Score
-4.05
Exon sequences
Seq C1 exon
GTCCAGAATATGACTCAGTCCATCCAGAATCTTGACCAGAGGACTCAGAAAGACCTGCAGTATGTGCAAAGAATGGAGGTGCAGCTCAGAGGACTGGAAACCAAGTTCAAACAGGTGGAAGAAAGCCACAAGCAGAATATCGCCAAGCAATATAAG
Seq A exon
GGCTAACTTTATGCATTAAATCAAAGCTGCAGAGACTGAAGAACAAGTTCAATCCCAGT
Seq C2 exon
GCCATAAAAGCGAAAATGGAGGAACTTAGGCCAATGATACCAGTGTTGGAGGAATACAAGGCCGATGCAAAATTGGTAATGCAGTTTAAAGAGGAGGTCAAGAATCTGACGTCAGTGCTAAGTGAGCTGCAGGAGGAGATCGGGGCCTTTGACTACGAGGAGCTCCACAACAGGGTGTCTAATCTTGAGGAGAGGCTTCGTGCGTGCATGCAAAAATTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018270_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.159 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=FE(50.5=100),PF041569=IncA=FE(32.7=100),PF101864=Atg14=FE(26.8=100),PF045827=Reo_sigmaC=FE(32.5=100),PF060097=Laminin_II=FE(45.5=100),PF138741=Nup54=PU(41.9=94.2)
A:
PF123083=Noelin-1=PD(0.1=0.0)
C2:
PF123083=Noelin-1=PD(0.1=0.0),PF041569=IncA=FE(46.8=100),PF101864=Atg14=FE(38.4=100),PF045827=Reo_sigmaC=FE(46.5=100),PF060097=Laminin_II=PD(28.6=43.2),PF138741=Nup54=PD(56.4=89.2)
Main Inclusion Isoform:
ENSDART00000002908fB4416
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTCAGAGGACTGGAAAC
R:
GCATCGGCCTTGTATTCCTCC
Band lengths:
144-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]