DreEX0052570 @ danRer10
Exon Skipping
Gene
ENSDARG00000102825 | olfm2b
Description
olfactomedin 2b [Source:ZFIN;Acc:ZDB-GENE-040426-2402]
Coordinates
chr1:58539032-58541150:-
Coord C1 exon
chr1:58540995-58541150
Coord A exon
chr1:58539266-58539485
Coord C2 exon
chr1:58539032-58539138
Length
220 bp
Sequences
Splice sites
3' ss Seq
GTGGCTGTGTCCGTTGACAGGAG
3' ss Score
6.43
5' ss Seq
TGGGTATTA
5' ss Score
1.91
Exon sequences
Seq C1 exon
GTGCTGAACGTCTCTGAGCACATGCAGCTCCTGACTCGGCGCACCGCTGGAGATCTGCAGGAGCTCAGAAGCTCGGAGACGATATTGGACACACTGGAGAAAACACTGACCAGTGCCCAGCAGAACCCGCAGGAGCTGAGCGACAGGAGCCTGCAG
Seq A exon
GAGCTGCGCTGGAGTGTGTCTCAGTGTCGCCCCCTGCGGGTGCTGCTGACTCGAGTGCGTGCGGATGTGGCTCAGCTGGACTCTGTGCGTGACGAGCTGCAGGGGATCAGTGTGTCGCTGTCACTGCTGCAGGAACGCTTCACACTCCAGCACTATCAGCAGCTGCAGCAGCGCATCTCCATCCTGCAGCAACACCTGCACAGCTGCTCCAGCCACCTGG
Seq C2 exon
GTTGTGGTCAGCTGATCAGCATCAGTGCTCCGCTCACAGTCAGATCTTCAGGCTCTCGCTTCGGGTCGTGGATGATGGAGACTTCCATTGAAAGTTCGGACAATCGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102825-'8-8,'8-6,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=FE(52.0=100),PF127952=MscS_porin=FE(34.9=100)
A:
PF123083=Noelin-1=PD(0.1=0.0),PF127952=MscS_porin=PD(47.3=93.2)
C2:
PF0219111=OLF=PU(12.8=88.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAACGTCTCTGAGCACAT
R:
GCGATTGTCCGAACTTTCAATGG
Band lengths:
261-481
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]