DreEX0052655 @ danRer10
Exon Skipping
Gene
ENSDARG00000035148 | orai2
Description
ORAI calcium release-activated calcium modulator 2 [Source:ZFIN;Acc:ZDB-GENE-060531-127]
Coordinates
chr5:60871451-60882131:+
Coord C1 exon
chr5:60871451-60871519
Coord A exon
chr5:60877841-60877886
Coord C2 exon
chr5:60881896-60882131
Length
46 bp
Sequences
Splice sites
3' ss Seq
TTACTTTTCTTTTTAACCAGAGA
3' ss Score
7.92
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
TTCTTTCGCAGATACACTTTCTGTCGGCCCTCATGTGGATGTGAAAACAAAACGAGACAGACAGCAAAG
Seq A exon
AGATGTGTGATGAAAAACAGTCCTAAAGAACGGCAAAGCCAATCAG
Seq C2 exon
CTACTATGAGCAGTGAGCTCACAGTGCCAATGGGCTCTCCAGCTCCCGGCGGCTCAGACCGGCTGCAGGATGGCGGTGGGATGGACTACAGGGACTGGGTTCGGCGCAGTTATCTGGAGCTGGTGACCTCCAACCATCACTCGGTCCAGGCTCTGTCATGGAGAAAACTGTACCTCAGCAGGGCCAAACTCAAAGCCTCCAGTCGAACCTCAGCCCTGCTGTCTGGCTTTGCCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035148_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.224
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF078567=Orai-1=PU(16.8=43.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCCTCATGTGGATGTGAAA
R:
GAACCCAGTCCCTGTAGTCCA
Band lengths:
146-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]