DreEX0052706 @ danRer10
Exon Skipping
Gene
ENSDARG00000004634 | osbp
Description
oxysterol binding protein [Source:ZFIN;Acc:ZDB-GENE-090312-18]
Coordinates
chr1:52027465-52038085:+
Coord C1 exon
chr1:52027465-52027632
Coord A exon
chr1:52028580-52028750
Coord C2 exon
chr1:52037877-52038085
Length
171 bp
Sequences
Splice sites
3' ss Seq
AACCCTTCATATTCACCCAGACC
3' ss Score
4.9
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGCATTTAGGCACATGCATTAATCAGATTCTGCCCGGTGTGTGTGTTGTGTTTAGATGGAAAAGCGGCATGAATGTGACTTTTATGCGAGTTTAGTGTGGAGTAAAACTCGCTCGTCTGATCTCATGTCACCGACTTCCTTCTTCAGAGGGGATCATTGAGAGATCAG
Seq A exon
ACCCCCTTCAGACACTGTGAAGCCAAGGGCTGTCGTGATGTCGGAGCCCAAAGCGCCCACCCCGGCCCCTGGAGACACCTATAAAGGCTGGCTCTTCAAATGGACTAATTACATCAAGGGATACCAAAGGCGATGGTTCGTCCTGAGCAATGGCTTACTGTCTTACTACAG
Seq C2 exon
GACTCAGGCGGAGATGGGGCACACATGTCGAGGCACCATAAACCTGGCCACGGCCAATATTGCGGTTGAGGACTCGTGCAACTTCGTGATCTCCAATGGCGGCACGCAGACGTATCACCTGAAGGCCAGCTCAGAGGTGGAGCGGCAGCGCTGGATCACAGCACTCGAGCTCGCCAAAGCCAAAGCTTTCCGCATGCAGGCCGAGTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004634-'0-2,'0-0,5-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.178 C2=0.099
Domain overlap (PFAM):
C1:
NA
A:
PF0016924=PH=PU(33.7=68.9)
C2:
PF0016924=PH=PD(65.2=84.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCAGATTCTGCCCGGTGTG
R:
TGGAGATCACGAAGTTGCACG
Band lengths:
243-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]