DreEX0052801 @ danRer10
Exon Skipping
Gene
ENSDARG00000012981 | osbpl7
Description
oxysterol binding protein-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-212]
Coordinates
chr12:28672263-28673645:-
Coord C1 exon
chr12:28673559-28673645
Coord A exon
chr12:28673436-28673477
Coord C2 exon
chr12:28672263-28672413
Length
42 bp
Sequences
Splice sites
3' ss Seq
ATTTTAATCTTTGTCCACAGGGA
3' ss Score
11.31
5' ss Seq
AAGGTTTGG
5' ss Score
5.28
Exon sequences
Seq C1 exon
AATCTTTCTCTTGACAAACCCAAAAAGAAATCCGCCAAGATTTTTGGTCACTCACGCACACTCTCCCGAGTTGAGGGTCTTGGAATG
Seq A exon
GGATTGCCCTCTCATTGGGATTATTCCATGTTTTCCACAAAG
Seq C2 exon
TTATCATCAAGCCAGCTGAACAGTTCATCCCTTTTGGGAACCTCTGTTCCCTCCATTCCCGATTATGTCAGCACTCCGGCAAACTCGCCAGCCTCCACCTCACCAGAGAGCAAGAAACTCCACCAGGACATCTGCTCGATGTCACTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012981_MULTIEX1-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.339 A=0.000 C2=0.402
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCGAGTTGAGGGTCTTGGAA
R:
TTGCTCTCTGGTGAGGTGGAG
Band lengths:
136-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]