DreEX0053805 @ danRer10
Exon Skipping
Gene
ENSDARG00000089262 | pbx3a
Description
pre-B-cell leukemia homeobox 3a [Source:ZFIN;Acc:ZDB-GENE-031218-1]
Coordinates
chr5:4821592-4829061:-
Coord C1 exon
chr5:4828926-4829061
Coord A exon
chr5:4824388-4824417
Coord C2 exon
chr5:4821592-4821757
Length
30 bp
Sequences
Splice sites
3' ss Seq
CCTTGTTTTTGTGCCCTCAGGGG
3' ss Score
10.64
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
GAGGAAAAGACGCAACTTCAGCAAGCAGGCGACGGAGATCCTGAACGAGTATTTCTACTCTCACCTCAGTAACCCTTATCCCAGCGAAGAGGCCAAAGAGGAGCTGGCCAAGAAATGTGCCATTACGGTTTCACAG
Seq A exon
GGGAAGGGAAGCACCATCACTGTGTCACAG
Seq C2 exon
GTGTCGAACTGGTTTGGTAATAAGCGTATTCGCTATAAGAAGAACATCGGAAAGTTCCAGGAGGAGGCAAATCTGTACGCAGCGAAGACGGCAGTGACGGCGGCTCAGGCTGTAGCGGCTGCAGTGCAGAACAGCCAGAACAACTCGCCCGCAACACCCAGCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000089262_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.014 A=0.000 C2=0.287
Domain overlap (PFAM):
C1:
PF083976=IMD=PD(28.9=80.4),PF0004624=Homeobox=PU(64.3=97.8)
A:
PF0004624=Homeobox=FE(14.3=100)
C2:
PF0004624=Homeobox=PD(21.7=23.2)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCTGGCCAAGAAATGTG
R:
GCGTACAGATTTGCCTCCTCC
Band lengths:
118-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]