DreEX0053810 @ danRer10
Exon Skipping
Gene
ENSDARG00000013615 | pbx3b
Description
pre-B-cell leukemia homeobox 3b [Source:ZFIN;Acc:ZDB-GENE-000405-3]
Coordinates
chr8:33934903-33942419:-
Coord C1 exon
chr8:33942284-33942419
Coord A exon
chr8:33939401-33939430
Coord C2 exon
chr8:33934903-33935068
Length
30 bp
Sequences
Splice sites
3' ss Seq
CCATTCTTTTTTGCCTTCAGGGG
3' ss Score
10.69
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
ACGGAAACGGCGGAACTTCAGCAAGCAGGCGACCGAGATCCTGAATGAGTATTTTTACTCGCATCTTAGTAACCCTTATCCCAGCGAAGAGGCCAAAGAGGAGCTGGCTAAGAAGTGCAGCATAACAGTATCCCAG
Seq A exon
GGGGTGGGAACCACCATCACAGTGGCACAG
Seq C2 exon
GTATCCAACTGGTTCGGCAACAAGAGGATCCGCTACAAAAAAAACATCGGCAAGTTCCAAGAGGAGGCCAACCTGTATGCCGCTAAGACAGCCGTGACTGCAGCACATGCAGCAGCTGCCGCCGTCCAGAATAGTCAGACCAACTCACCCACCACACCCAACTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000013615_MULTIEX1-4/8=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.321
Domain overlap (PFAM):
C1:
PF0044324=UCH=FE(15.8=100),PF0004624=Homeobox=PU(75.0=97.8)
A:
PF0044324=UCH=FE(3.7=100),PF0004624=Homeobox=FE(12.9=100)
C2:
PF0044324=UCH=PD(17.5=89.3),PF0004624=Homeobox=PD(21.7=23.2)
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGCTAAGAAGTGCAGCAT
R:
GCTGTCTTAGCGGCATACAGG
Band lengths:
126-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]