DreEX0053819 @ danRer10
Exon Skipping
Gene
ENSDARG00000052150 | pbx4
Description
pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
Coordinates
chr3:52745299-52756901:+
Coord C1 exon
chr3:52745299-52746411
Coord A exon
chr3:52752925-52753026
Coord C2 exon
chr3:52756828-52756901
Length
102 bp
Sequences
Splice sites
3' ss Seq
CCCTGTTGCCCTGTGTCCAGATG
3' ss Score
7.41
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
TCCAGGGACGCTCTTATTTTCTTGTTAGTCTGCTTTATGGGAGTGCTAGTGTGCAGCCTTTTGCTGTAGACAACACTGGTTTTTAGCAGGAACCGCACGCGGTGTTTCACCATCGGTCGCGCGTCGTTTGGATGTGGTTCAGCCTCACATTTCAGTCGCACTCTCGTTGTTTGTTTTCTTTTTTTATCTAGTGGCTCGTTCAGCTCCGCGTTTGTATCCGCGCTGTCGGTGGTACATGCTCACTGAGACAGCCCGCTGAAACACGCTTTCATTGGTTTGCGGCGGGGAAACGGAGAGATTCGGCTCAAAAGTATTATGGATGATCAGACCCGAATGCTGGCTAGCATGGGCGGACTCGGCGGACTCTCGCAAGCCGACGTGGGTGACCCCGATTCGGTTCGGAAGCAGCAGTCGCTCGGTCAACCGCAGCAAGACATAGGAGATATCCTCCAGCAGATCATGGCCATCACCGACGAGAGCCTCGACGAAGCCCAGGCGAG
Seq A exon
ATGCTGGCCAGAGGAGGCACCGGCGCAGTGGACCCCACAGAGGGAGGGGGAGCTGGGGGGGAGCACAGCAGGGTGTGCCCTGCCGCTCAACTTCCAGCACAG
Seq C2 exon
AAAACACGCACTGAACTGCCACAGGTTGAAGCCAGCTCTCTTCAGTGTTTTATGCGAGATCAAAGAAAAAACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000052150_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.782 A=0.686 C2=0.058
Domain overlap (PFAM):
C1:
PF037928=PBC=PU(14.6=46.8)
A:
PF037928=PBC=PD(9.1=8.6),PF037928=PBC=PU(5.6=28.6)
C2:
PF037928=PBC=FE(12.6=100)
Main Inclusion Isoform:
ENSDART00000104683fB4522
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACGGAGAGATTCGGCTC
R:
GAGAGCTGGCTTCAACCTGTG
Band lengths:
255-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]