DreEX0055259 @ danRer10
Exon Skipping
Gene
ENSDARG00000008403 | phospho1
Description
phosphatase, orphan 1 [Source:ZFIN;Acc:ZDB-GENE-040801-198]
Coordinates
chr3:15656117-15661237:+
Coord C1 exon
chr3:15656117-15656177
Coord A exon
chr3:15656650-15656687
Coord C2 exon
chr3:15659239-15661237
Length
38 bp
Sequences
Splice sites
3' ss Seq
TCATTTCTGTCTGTTTATAGGTT
3' ss Score
11.58
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTCAGACGCAGAGAACAGCCGTCGGCAGGGATGAACATCTGAACTGGACGCCCAACTTAAG
Seq A exon
GTTAACACTGCGCAGCTGCGAGATTAAGGTGAAAACAG
Seq C2 exon
GAGCAGCTGTAAACAAAGTCAAAACCTCCCACAAGTGCTGCTATTTTCCGCTGATCATAATGCGGGACTCAGTCTTCAACTGCTGTGTTTCTCCTCCTCATCCTCCTGGAGCTGCAGCTGCAGAGCGCAGAAGCAGATCTCCAGCCCCGCAGAACCACAGCCGCTTCCTGATGTTCTTCGACTTTGACGAGACTCTAGTGGATGAGTGCAGTGATGACTCCATGGTGTCTGCAGCACCCGGCGGAGTCCTGCCCGGCTGGCTGAAGGACACGTACCGTCCCGGCCGCTACAATGAGTACATGCAGCGCGTCCTGGCCTACCTCTCTGAGCAGGGCGTCACTCCGGCGGCCATTCGGGCCACTGTGGAGAAGCTGCCCCCCTGTCCAGGCATCCCGGCTTTGATGCATTTCCTGCTCTCACAGCCATCCAGAGACTTTGAAGTGGTTTGTGTGTCTGACGCCAATACAGTCTTCATAGAGACGTGGCTGCAGTACATGGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008403_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF068887=Put_Phosphatase=WD(100=86.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGGCAGGGATGAACATCTG
R:
AGTTGAAGACTGAGTCCCGCA
Band lengths:
122-160
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]