DreEX0055283 @ danRer10
Exon Skipping
Gene
ENSDARG00000029905 | phyhd1
Description
phytanoyl-CoA dioxygenase domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-041114-159]
Coordinates
chr21:4347309-4350408:+
Coord C1 exon
chr21:4347309-4347467
Coord A exon
chr21:4347592-4347597
Coord C2 exon
chr21:4350333-4350408
Length
6 bp
Sequences
Splice sites
3' ss Seq
CCACATGTTAATGGGTAAAGATG
3' ss Score
-3.09
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TTCCGGGACGAGGGCTATCTGGTGCTGGAAGGCCTTCTGTCTCCAGAGGAGTGCGATGCTTTACGGAGGCGCATGAGTGAGATTATCGAGAGCATGGACGTTCCTGAACACTGCAGGACACAGTTCTCCACCGACCATGACGAGCAGCTGAAAACGCAG
Seq A exon
ATGCAG
Seq C2 exon
GGAAATGCAGACTATTTCATCACCAGTGGAGATAAGATCCGTTTCTTCTTTGAGAAAGGAGTGTTTGATGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029905-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.199 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057218=PhyH=PU(21.0=98.1)
A:
PF057218=PhyH=FE(0.4=100)
C2:
PF057218=PhyH=FE(10.1=100)
Main Inclusion Isoform:
ENSDART00000147187fB4647
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACGTTCCTGAACACTGC
R:
ACGGATCTTATCTCCACTGGTGA
Band lengths:
108-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]