DreEX0055711 @ danRer10
Exon Skipping
Gene
ENSDARG00000060946 | pip5kl1
Description
phosphatidylinositol-4-phosphate 5-kinase-like 1 [Source:ZFIN;Acc:ZDB-GENE-060526-248]
Coordinates
chr5:31093163-31099017:-
Coord C1 exon
chr5:31098855-31099017
Coord A exon
chr5:31096669-31096707
Coord C2 exon
chr5:31093163-31093790
Length
39 bp
Sequences
Splice sites
3' ss Seq
ATGTTCACCTCTGCTTTCAGATC
3' ss Score
10.4
5' ss Seq
CAGGCATGT
5' ss Score
2.05
Exon sequences
Seq C1 exon
ATCAACAGCGTCCTTGGCTCCTGCGTCAAGTGGAGATCGACACAGCTTTTCTTCAGACACTCAATGTGTTGGACTACAGTCTCCTGCTGGCCCATCAGCCCCTGCACCAGGATGAGCTCAGCCAGAGTCTGTCCTTCGCAACACTCATCATGCGCACCAAAAA
Seq A exon
ATCCTTCCCTTTCTTCTCCAAACGGCCACTGGCAGGCAG
Seq C2 exon
GTCAGTGAATCCAGTGTCCAGTCCCACACATGCCGCTTCACCCACTGTACCAGGAGTGGTGGCAGATGAAGACTCATCACCCCTCCCCTCTGAATTAAACTGTACACACAACAGTCACATAACAGAATGCAGTGGCAATGATGGAATGGACAATACAAGTCTTGAAGGAGAAAACATTGAGGGACCCAGTAGAGCAGGAGCAGAATCGGCTGACCTACAAGCGTTTCAGTCCCAGAACCGGAGGCTCCTTCCCAACTTCAAGAACCCGCTTCATGTCATTGATGGACCAGAGCAGCGTTACTTCATCGGCATTATTGACATCTTCACTGTTTATGGTTTTAGGAAGAGGCTTGAGCATTTATGGAAAAGACTGAGACACCCAAGTCAAACATTCTCCACTGTCAGTCCTCCAGCTTACTGTCACCGGTTGTGCCACTGGGTTCAGGACCATACCAAATAAAAGAGGCGACAGATCATGTGCCAGAAGATATGCACCTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060946_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.504
Domain overlap (PFAM):
C1:
PF0150413=PIP5K=FE(17.7=100)
A:
PF0150413=PIP5K=FE(3.7=100)
C2:
PF0150413=PIP5K=PD(44.4=98.1)
Main Inclusion Isoform:
ENSDART00000141328fB4684
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACTACAGTCTCCTGCTGG
R:
TGTGGGACTGGACACTGGATT
Band lengths:
122-161
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]