DreEX0055918 @ danRer10
Exon Skipping
Gene
ENSDARG00000051861 | pkp3a
Description
plakophilin 3a [Source:ZFIN;Acc:ZDB-GENE-060512-114]
Coordinates
chr25:22082429-22094403:-
Coord C1 exon
chr25:22093946-22094403
Coord A exon
chr25:22089466-22089690
Coord C2 exon
chr25:22082429-22082535
Length
225 bp
Sequences
Splice sites
3' ss Seq
TTCCTATCTTTGCTGTTCAGCTC
3' ss Score
7.01
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
GCAAGAAGTGCGTACATTTGAAACTATTATGTATGTATGTAAATCATCTAAGTTCTCTTTTGAAGCATGCAATTTCAAAAATGCTACATTTGATTACACTGTTGCCAAGTAAACATGCCTGGTTTTTGGCTGTTTTTTTGCCTCCGACTCCTCCTTGATGTGTTTCACACCCATTTTGTCTCTCTCCATTCTCCGCTGTAACTGTCTGACACATAATCACACACACACCTATCTTAATACAGGGGATGAGTAACCAGAAAGATGATCATGAATACACACACACACATACACACACACATACACACGTGTACAGTTTTATTGTGATAAGGGCGTAGTCACAGCAGATTCTATATCTTCTTGCCTCCCTGTGAAATCTGTCAGATTTTAACAAGCAAACTGAGCGTGAGCACACTACATACAGCACTGGAAATATACAACGACTACTGCTGGTGTTATTG
Seq A exon
CTCGCTTCACAATGAGCACGAGTGTGACTTCGGAGAGCGTCTTTCTCTCGGCGCTGCAGCCCAACTCTACCGTCAGCACGTACGCGGTCCCGTCCGAGAACGAGCTCGGGTCGCACAAGGAGGAATCCAGATTTAAGCGCATGCAACAGCAGGTGTCCATGAGACTAGCGGAGAAATCCACGCTCCCGCGCCAGAACGGCTCTTCGTCACAATACGCGTCCTCAG
Seq C2 exon
AGTCTGGTAATTATTCAACAATGACAAAATATTCAACAGTGGGACAAAACTTTATCCCGAGTTTCAGCTCGAAATCTTTTGTCAACTCGTCTGGCCGACAAATAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000051861_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.705 C2=0.106
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCATGAATACACACACACACA
R:
CGGCCAGACGAGTTGACAAAA
Band lengths:
293-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]