DreEX0056147 @ danRer10
Exon Skipping
Gene
ENSDARG00000062590 | pleca
Description
plectin a [Source:ZFIN;Acc:ZDB-GENE-030131-8984]
Coordinates
chr19:22846242-22848175:-
Coord C1 exon
chr19:22847992-22848175
Coord A exon
chr19:22847704-22847736
Coord C2 exon
chr19:22846242-22846399
Length
33 bp
Sequences
Splice sites
3' ss Seq
TGCAAGACTTATTTTTGCAGAAC
3' ss Score
5.43
5' ss Seq
CTGGTAAAG
5' ss Score
5.75
Exon sequences
Seq C1 exon
TTTAAGACTTTGAGAGTGGAGGAGTATCGGCTGACCCTAAAGAACCTGGAGCAGCACTATCAGGCGTTCCTTCGGGACAGTCAGGATTCAGGACTCTTCGGTGCTGATGATCGCATGCAGGCTGAAAACAGTTACAACAAAGCCACTCAGCACTATGATAACCTGCTACGCTCTGTTGAACAAG
Seq A exon
AACCTGCACTCATCCAAAAGGACAGTACATCTG
Seq C2 exon
GGGAACAGGATGAGTCGGTGTGCAAGAGTTACATCACCCAGATAAAGGACCTGAGACTGAGACTGGAAGGCTGTGAGAGCCGCACTGTCAATCGCCTCAGACAGATGGTGGATAAAGAGCCTCTCAAAGCCTGCACACAGAGAGCCACTGAACAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062590_MULTIEX1-5/14=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.583 C2=0.129
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000090669fB4718
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGACTCTTCGGTGCTGATGA
R:
CTCTTGCACACCGACTCATCC
Band lengths:
123-156
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]