DreEX0056167 @ danRer10
Exon Skipping
Gene
ENSDARG00000021987 | plecb
Description
plectin b [Source:ZFIN;Acc:ZDB-GENE-100917-2]
Coordinates
chr16:5570393-5575122:+
Coord C1 exon
chr16:5570393-5570576
Coord A exon
chr16:5572322-5572342
Coord C2 exon
chr16:5574965-5575122
Length
21 bp
Sequences
Splice sites
3' ss Seq
CTGTTGAATTCACATTACAGGAG
3' ss Score
6.24
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
Exon sequences
Seq C1 exon
TTCAAGACGATGAAGCCAGACGAGTACCGGCTGATCCTGAGGAACCTGCAGCTCCACTATCAGGACTTTCTCAAAGACAGAGAAGAGTCAAAGCTCTTCAATTCCAGTGACAACATGCAGATCGAGAGGGACTATAAGGAGACCACACAGCATTTTGACAACCTTTTGCGCACGCTGGAGAAAG
Seq A exon
GAGCCGCTGTCAGAGCACAGG
Seq C2 exon
GTGAGCAGGATGAATCTGTGTGCAAGTCGTACATCACCCAAATCAAAAACCTGCGTCTGCAGATCGAGGACTGTGAGTCTCGAACGGTGGCTCGTATCCGACAGCCTGTGGATAAAGATCCGCTCAGAGACTGCATTCAGAAAACTGCTGACCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000021987_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.044 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000160008fB4723
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGACAACCTTTTGCGCACG
R:
ACTCACAGTCCTCGATCTGCA
Band lengths:
109-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]