DreEX0056697 @ danRer10
Exon Skipping
Gene
ENSDARG00000062986 | pnpla7a
Description
patatin-like phospholipase domain containing 7a [Source:ZFIN;Acc:ZDB-GENE-070112-1812]
Coordinates
chr21:13524627-13525433:-
Coord C1 exon
chr21:13525315-13525433
Coord A exon
chr21:13525070-13525082
Coord C2 exon
chr21:13524627-13524783
Length
13 bp
Sequences
Splice sites
3' ss Seq
TTTTTGTGTGTGGTTTGCAGCAG
3' ss Score
8.78
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
AGAGAGATGTACCAGCGTGTGTTCCAGAAACCTGCTGATCGTCACTCTGATTTCTCTCGTCTGGCTCGAGTTCTGACCGGAAACACCATCGCTCTGGTGCTGGGAGGTGGAGGAGCCAG
Seq A exon
CAGGTGTTTGAAG
Seq C2 exon
GGGTTGTTCTCAGGTAGGCATCATTCGGGCATTGAATGAAGCAGGAATCCCCATCGATCTGGTGGGTGGCACCTCTATTGGTTCTATGATGGGAGCGCTTTACGCGGAGGACCGCAGTTACAGCAGGATGAAGATCAGAGCCAGAGAGTGGGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062986-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=PU(4.8=20.0)
A:
NO
C2:
PF0173417=Patatin=FE(31.1=100)
Main Inclusion Isoform:
ENSDART00000151547fB4765
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGTTCTGACCGGAAACACC
R:
CCTGCTTCATTCAATGCCCGA
Band lengths:
98-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]