DreEX0056709 @ danRer10
Exon Skipping
Gene
ENSDARG00000040002 | pnpla7b
Description
patatin-like phospholipase domain containing 7b [Source:ZFIN;Acc:ZDB-GENE-050309-66]
Coordinates
chr5:24546477-24549284:-
Coord C1 exon
chr5:24549166-24549284
Coord A exon
chr5:24548776-24548891
Coord C2 exon
chr5:24546477-24546633
Length
116 bp
Sequences
Splice sites
3' ss Seq
AGCCGTTTCTAACCCATTAGTGT
3' ss Score
2.95
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
AGAGAGATGTATCAGCGAGTATTTGAGAAGCCTCCCGACCGGCATTCTGACTTCTCACGTCTGGCTCGAATCCTGACAGGCAACGCCATCGCTCTGGTGCTGGGCGGAGGAGGAGCCAG
Seq A exon
TGTTGTTTGGGGGCTTGACAACATCAGCATGTCTGTGGTTTTCTCTCGATGATAGAGACTCTTTGTCTGCTCTCTGTCCCTGCCTGCTATCAGTCGTAATCAGCGACTTTTAAAAG
Seq C2 exon
AGGCTGCTCACAGGTGGGCATCATTCGTGCAATGAGCGAGGCAGGAATCCCTGTGGATCTGATCGGCGGCACTTCCATTGGTTCATTGATAGGAGCTCTATATGCTGAAGAGCGTAGCGTCAGTCGCATGACGGTTAGGGCACGCCAGTGGGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040002_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=50%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0173417=Patatin=PU(4.8=20.0)
A:
NO
C2:
PF0173417=Patatin=FE(31.1=100)
Main Inclusion Isoform:
ENSDART00000002118fB4766
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGAGTATTTGAGAAGCCTCCC
R:
CCTAACCGTCATGCGACTGAC
Band lengths:
244-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]