DreEX0056763 @ danRer10
Exon Skipping
Gene
ENSDARG00000054778 | pogza
Description
pogo transposable element with ZNF domain a [Source:ZFIN;Acc:ZDB-GENE-040914-76]
Coordinates
chr19:42865101-42867800:+
Coord C1 exon
chr19:42865101-42865217
Coord A exon
chr19:42867421-42867497
Coord C2 exon
chr19:42867716-42867800
Length
77 bp
Sequences
Splice sites
3' ss Seq
TACATTTGTTTTACCTCTAGCTC
3' ss Score
8.05
5' ss Seq
CAGGTTTGA
5' ss Score
5.11
Exon sequences
Seq C1 exon
TTACTGTAGTCCCAAGCGTCATTAATGCACAGATATCACCACAGCCTAATGGCGCCTCTACTGATCAGACATCAGCTGCTTTTGGACTCCCAAATCAAGCTGTGCCTTTGGCTTCTG
Seq A exon
CTCCTGCTGTTACACTCCTGCCTAATGCAGTCCAGACAGGTGGAGCAGCGGGACAAACTATCTACTTCAGTGCGCAG
Seq C2 exon
CCTAACTCAGGTCAACCTCTGGCCGGCTCAATGAATTTGGGAACATACTTCTTGAATGGACAGCCTGTTAGTTTTGTGACTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054778_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.525 A=0.231 C2=0.069
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACAGATATCACCACAGCC
R:
AGCAGTCACAAAACTAACAGGCT
Band lengths:
176-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]