DreEX0056771 @ danRer10
Exon Skipping
Gene
ENSDARG00000076542 | pogzb
Description
pogo transposable element with ZNF domain b [Source:ZFIN;Acc:ZDB-GENE-100609-3]
Coordinates
chr16:38180563-38183517:+
Coord C1 exon
chr16:38180563-38180675
Coord A exon
chr16:38181623-38181837
Coord C2 exon
chr16:38183484-38183517
Length
215 bp
Sequences
Splice sites
3' ss Seq
ATCCCTCCCCTCCCCTACAGAGT
3' ss Score
10.65
5' ss Seq
CAGGTTCTG
5' ss Score
2.14
Exon sequences
Seq C1 exon
CGTTGTGAAGCTGACTTGTGCAGGTTGTGAATACTCCACTCCTCACGGAAATTTGATGGCCAAACATCTCATCAAGTTCCCTGATCACTCCTACTGTTTATTCATGCGCAAAG
Seq A exon
AGTGTTTGGAGACAGATATTGAGTTCTGCCATGTTGAGGAGGAGGTGGAGGGTCCACAAGGGGATGAAGCTAGTGATGTTGGGACACAGCCTGACTGGTTGTCCCTGAAACAGTGGAATGTGCCCAAAGAGGAAGGAACAGTGCCAGAGTTCATGGAACGTTGTGGCCCACGGCATATAATGACCAGGAATCATGATGTCCTCGACTACTTCCAG
Seq C2 exon
GTAGTGCAAAAGTTGGATTCGTTGACTCTAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076542_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.091 C2=0.417
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000166844fB4772
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGTGAAGCTGACTTGTGC
R:
AGTCAACGAATCCAACTTTTGCAC
Band lengths:
140-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]