DreEX0057995 @ danRer10
Exon Skipping
Gene
ENSDARG00000074468 | prdm11
Description
PR domain containing 11 [Source:ZFIN;Acc:ZDB-GENE-061221-1]
Coordinates
chr25:7580751-7585705:-
Coord C1 exon
chr25:7585168-7585705
Coord A exon
chr25:7581286-7581395
Coord C2 exon
chr25:7580751-7581010
Length
110 bp
Sequences
Splice sites
3' ss Seq
ATCCCTTCATTTTACTTTAGCAT
3' ss Score
6.61
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GACATTATCAACAAAGTTTGAAGAGTAGTGATAACTGACAGAACTGCGGAGAGCTTGGAGATGTAAAACTAAAATAGGGGAAAGGCTGTTCATTTTTAAAACCTTAAACTTCACACACAAACCGCCTGCGTAATGTTGCCAATATTTGTTAGGCGCGTTCCCAAAAATGAACGCGCGCGCGAGACGCTCCCTCACACAACTTGACACACTACCTAACTTTCCCTTTCCTGAAATTTCGTGCCCGGTCTGCACAAACGCCGCTTTCTTCCGTTTTCCATGTCATTTCCTGTAATAAAAAGATGGTGGTCATAGCAGAGAGAAGCAGCTGACTGTGGTACAAACATTTGGAGATGATAAACTTTGCATCGCCCGGGACTAGTGAAATCCCCCCGTGCCGTAGCCTCGCCGCCGCGGTCCACGGAGCGGCCGAAACCGAGACGCGCCGCAGCTGAAGAAGACCACCAAAGACCCCGCGACGCACTGCGTATATCCTATAGACG
Seq A exon
CATTAATATGTCGGAGTGAAGCGGAGACTCCATCCTGCCCAGATCATGGCAGATTCTTCCACCAATCCAGATCATTCCTCCATGGAAGCTAAAGGCGAATGCAGCACCAG
Seq C2 exon
TCTGCGAAGAGTGCAAGAAGTATTACCTGGAGGATTGTCCTACCCATGGGCCGCCTGTCTTTGTGCCAGACACCCCTGTGGTATCAGGGGTGCCCAATCGGGCAGCTCTCACCGCACCCTCAGGCATCGAAGTGCGAAGAAATGGCGATAAGGTGGATGTCTACTGCATGGATGAAAAAATACCAAAGGGGGCGCTGTTTGGTCCTTATAAAGGCCAAATAATGGCCTCAGATAAACCTTCAGGGCCGTACTCTTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074468_MULTIEX1-1/6=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.184
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCTGAAGAAGACCACCAA
R:
AGCGCCCCCTTTGGTATTTTT
Band lengths:
252-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]