DreEX0060427 @ danRer10
Exon Skipping
Gene
ENSDARG00000077653 | rabl6b
Description
RAB, member RAS oncogene family-like 6b [Source:ZFIN;Acc:ZDB-GENE-081104-97]
Coordinates
chr5:26209024-26211351:+
Coord C1 exon
chr5:26209024-26209158
Coord A exon
chr5:26209274-26209279
Coord C2 exon
chr5:26211304-26211351
Length
6 bp
Sequences
Splice sites
3' ss Seq
TCTTAATTATGTCAAAATAGCTC
3' ss Score
3.42
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
TGAAGATTGTTATCCGAGGAGATCGAAACACTGGGAAAAGCACCCTGTGGCATCGACTGCAGGGTAAGAAGTTCCAGGAGGAGTATATTCCCACTCAGGAGATCCAGGTCACTAGCATCCACTGGAATTACAAAA
Seq A exon
CTCAAG
Seq C2 exon
CTACTGATGACGTGGTGAAGGTGGAGGTTTGGGATGTGGTGGATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077653-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF084778=Miro=PU(30.1=95.7)
A:
PF084778=Miro=FE(1.4=100)
C2:
PF084778=Miro=FE(11.0=100)
Main Inclusion Isoform:
ENSDART00000111019fB5084
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGGGTAAGAAGTTCCAGGA
R:
CCACCTTCACCACGTCATCAG
Band lengths:
102-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]