DreEX0060428 @ danRer10
Exon Skipping
Gene
ENSDARG00000077653 | rabl6b
Description
RAB, member RAS oncogene family-like 6b [Source:ZFIN;Acc:ZDB-GENE-081104-97]
Coordinates
chr5:26211304-26213567:+
Coord C1 exon
chr5:26211304-26211351
Coord A exon
chr5:26212654-26212683
Coord C2 exon
chr5:26213515-26213567
Length
30 bp
Sequences
Splice sites
3' ss Seq
TCTTACTGCTGTCCGACCAGGCC
3' ss Score
7.27
5' ss Seq
TAGGTGAGA
5' ss Score
6.95
Exon sequences
Seq C1 exon
CTACTGATGACGTGGTGAAGGTGGAGGTTTGGGATGTGGTGGATAAAG
Seq A exon
GCCAAAAAATCCCCCTTCCTGAAGGTGTAG
Seq C2 exon
GAAAGGGGAAAAAGAAAAGTGAAGCCTTGAAGTTGGAAAATGAACCTCAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000077653_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.364 C2=0.625
Domain overlap (PFAM):
C1:
PF084778=Miro=FE(11.0=100)
A:
PF084778=Miro=FE(6.8=100)
C2:
PF084778=Miro=FE(11.6=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGACGTGGTGAAGGTGG
R:
TCTTGAGGTTCATTTTCCAACTTCA
Band lengths:
97-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]