DreEX0062197 @ danRer10
Exon Skipping
Gene
ENSDARG00000062650 | rif1
Description
replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]
Coordinates
chr9:22970150-22971267:+
Coord C1 exon
chr9:22970150-22970267
Coord A exon
chr9:22970457-22970559
Coord C2 exon
chr9:22971146-22971267
Length
103 bp
Sequences
Splice sites
3' ss Seq
GATCTCCCTGTTCGCTGCAGGCG
3' ss Score
8.41
5' ss Seq
GAGGTACGT
5' ss Score
10.2
Exon sequences
Seq C1 exon
AGCGTAGTCGAGAACATTTAGCAGCACTTTACGCTATAAACTCCTCCGATTCCTCTGATATAGTTTGAGTTTTGATGAAATCGCCTTCAGAGCCTGTCAGCGAGTCCTCAGTCGCGAG
Seq A exon
GCGAGGAGCACGACGCACAACGCACATGATAACGCAATAGCTTTTAAGTACAGACGATAATCTGCCATTAAATTTGCATATAAGGCTTTAAAGACGGACCGAG
Seq C2 exon
GTTGTGAGGATGATGGCGGCAGTGCCTTTATCCAGTACCAGCCTCCTTCCTCTTCTGGAGTGTTTGGAAGATGAATCAGCTGGGCTTTCAGCGCAGACGGATGCCTACATCACCATTGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062650_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF122313=Rif1_N=PU(5.0=47.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCGAGAACATTTAGCAGCACT
R:
TTTGCAATGGTGATGTAGGCA
Band lengths:
235-338
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]