DreEX0062466 @ danRer10
Exon Skipping
Gene
ENSDARG00000031269 | rnf123
Description
ring finger protein 123 [Source:ZFIN;Acc:ZDB-GENE-050208-529]
Coordinates
chr22:34529452-34544272:-
Coord C1 exon
chr22:34544188-34544272
Coord A exon
chr22:34537176-34537202
Coord C2 exon
chr22:34529452-34529591
Length
27 bp
Sequences
Splice sites
3' ss Seq
CTCATTTGCATGACATCCAGGGG
3' ss Score
3.49
5' ss Seq
AAAGTAAGT
5' ss Score
9.72
Exon sequences
Seq C1 exon
GGTTGTGGCTTTGGCTACAGGTACACTCGTCTTCCTCATCTGCTGAAGACCAAACCCGAGGACGCCAACCTGCCCAGCCTGCAAA
Seq A exon
GGGATTTGTCAATTGCTAGTTTTCAAA
Seq C2 exon
AGCCCTGTCCATCCCTTCTGCTGCAGAGGCACATGGCTGAACTCCTCATTCAAGACAGAGACATGGCTGCCAGTTTCCTCAATAGCGTCTTAAACCAGCTCAACTGGGCCTTCTCTGAATTCATCGGCATGATACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031269-'15-17,'15-16,16-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000044429fB5262
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGAAGACCAAACCCGAG
R:
AAACTGGCAGCCATGTCTCTG
Band lengths:
122-149
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]