DreEX0062692 @ danRer10
Exon Skipping
Gene
ENSDARG00000038300 | rnf34a
Description
ring finger protein 34a [Source:ZFIN;Acc:ZDB-GENE-030131-6135]
Coordinates
chr8:40192796-40201676:+
Coord C1 exon
chr8:40192796-40192825
Coord A exon
chr8:40195641-40195682
Coord C2 exon
chr8:40200781-40201676
Length
42 bp
Sequences
Splice sites
3' ss Seq
CTTTGCTCCTCCCACTTAAGTGG
3' ss Score
4.17
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
Exon sequences
Seq C1 exon
TGGAAAACGTGAGCAACCCCATCACTGCAG
Seq A exon
TGGTAGCTTATCCCCCTCCAATCTGCAATGGCGGAATCGGAG
Seq C2 exon
ATAGTTGCAGGACACAGTTATCGAATGACGATAACCTGTGTCGAATCTGCATGGACGCGGTCATCGACTGTGTGCTGCTGGAGTGCGGTCACATGGTCACCTGCACCAAATGCGGGAAGCGCATGAGCGAATGCCCAATATGCAGACAATACGTTATCAGGGCCGTGCATGTTTTCAAGTCCTAATACTTTTAGGAATACCCCCCTGCTCCCTCTGTTTTGCATTAAGGACGCAGCAAGTGCCCCATCGTCGAGAAAGATAAAGTTCTCAGCGTAATTTTTCATGAAGCTTCAGGACGCCTTCAGCCTGGGATCCGCAATGGCTTTGTCAATAGACGCTTCAGTAAGAACATTCCTCAAGCTCTTCAATGAGGCTTTGTTTTAATATGCAATTGTTCAGCTGCAACACCTCACAACCTCGACCCGATGTCCTGCAGCTTTCTGCTCACCTGTCACATGCAAGCACTGTGAGAAACTCAAAGAACAGAACAATGAGAGTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000038300_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.455 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF102084=Armet=PD(6.3=36.4)
A:
NO
C2:
PF139201=zf-C3HC4_3=WD(100=74.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACGTGAGCAACCCCATCA
R:
TTTGGTGCAGGTGACCATGTG
Band lengths:
137-179
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]