DreEX0063456 @ danRer10
Exon Skipping
Gene
ENSDARG00000063701 | rreb1a
Description
ras responsive element binding protein 1a [Source:ZFIN;Acc:ZDB-GENE-030219-137]
Coordinates
chr24:2386489-2454270:-
Coord C1 exon
chr24:2453862-2454270
Coord A exon
chr24:2405401-2405471
Coord C2 exon
chr24:2386489-2386608
Length
71 bp
Sequences
Splice sites
3' ss Seq
TCTTTGTGGTCTCCCTGCAGTGT
3' ss Score
10.31
5' ss Seq
TCGGTAAAT
5' ss Score
6.8
Exon sequences
Seq C1 exon
TGCTTGCGCGCGGCTGCAGCTTCAGTAACGCGCGTCCCCTTGGAGACTAGAAGAGCAACACGTGACCCTGCGCCTTACTTATCAGCTTTAGAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGCAGTGGGAGGAAAACGAAATAAGCGTTTTCCTCTCTCCTCCCTAAAGCATCTCGGCGTGGGGGAATCTGGAGAGTGGGCAACTCAAACGCAAAGTTGACGAACTTTGCACATCTTTTACAAACGCCATTTTGATTCCTCTCCGGAACAACTTTTGCAGCTTCTTTCTTTTCTTTTTTTTTCTTTCTCTCTCATCATCACCATCATCATCATCATGTCTCGGCGAAAGCAACCCAACCCCAACAAAGTCAAAC
Seq A exon
TGTGAGCAGTGGTTGCTGACACTTGAGGTGCTTCTTCCAACACCGAACGGCAGCAGAGTAAAGCAACCTCG
Seq C2 exon
CTATGGAAAATTCAGCAGAAGAGGCGAGAACAGAATCAGCGAATTGCAGCCTTACTGGGGAAGAGGAGGCGGAGCAAAGTGATGAGCGCCAGAGCCCCGCCCCTACAGAAGCTCACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000063701_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000093331fB5334
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGGAACAACTTTTGCAGCT
R:
TCCTCTTCCCCAGTAAGGCTG
Band lengths:
180-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]