DreEX0063835 @ danRer10
Exon Skipping
Gene
ENSDARG00000078954 | rxrba
Description
retinoid x receptor, beta a [Source:ZFIN;Acc:ZDB-GENE-980526-436]
Coordinates
chr19:7333380-7339242:-
Coord C1 exon
chr19:7339110-7339242
Coord A exon
chr19:7333938-7333979
Coord C2 exon
chr19:7333380-7333471
Length
42 bp
Sequences
Splice sites
3' ss Seq
CGTTGTGATTGAACACACAGGGA
3' ss Score
4.26
5' ss Seq
CAGGTAATG
5' ss Score
9.43
Exon sequences
Seq C1 exon
GCTGGAATGAACTGCTGATCGCATCATTCTCTCATCGCTCCATCACAGTGAAGGATGGCATTCTGCTGGCCACCGGTCTCCATGTGCACAGGAACAGTGCTCACAGCGCTGGGGTGGGAGCCATCTTTGACAG
Seq A exon
GGAGAGTGCGCACAATGCAGAGGTTGGGGCCATATTCGACAG
Seq C2 exon
GGTGCTGACCGAGCTGGTGAGCAAAATGAGGGACATGCAGATGGATAAAACGGAGCTGGGATGCCTCAGAGCCATCATCCTATTCAACCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078954_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0010425=Hormone_recep=FE(22.3=100)
A:
PF0010425=Hormone_recep=FE(7.1=100)
C2:
PF0010425=Hormone_recep=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGATGGCATTCTGCTGGC
R:
GGCATCCCAGCTCCGTTTTAT
Band lengths:
148-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]