DreEX0063838 @ danRer10
Exon Skipping
Gene
ENSDARG00000078954 | rxrba
Description
retinoid x receptor, beta a [Source:ZFIN;Acc:ZDB-GENE-980526-436]
Coordinates
chr19:7351072-7353410:-
Coord C1 exon
chr19:7353274-7353410
Coord A exon
chr19:7351512-7351560
Coord C2 exon
chr19:7351072-7351301
Length
49 bp
Sequences
Splice sites
3' ss Seq
ATATTCAGTTTCTTGCACAGGCT
3' ss Score
5.72
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
GGATCACTTCGGTTGGTAAAAGATCCAAAGGCCCGGGCCTCAGTCCGCGGTCTTGAGTTCGACAGCCACCCGACATCAGAGCGAGAGAGTCGGTGTGAACAGCAGAGCCCGGCTGCACAACATGGGCGACAGCAGAG
Seq A exon
GCTGATCGTTTTGCTTCATAAGACCGCAGTGTATCATCAGGAGCCTCAG
Seq C2 exon
ATTCTCGTAGTCCAGACAGTTCATCCGTTTCCTCACCACCATCAGGTCAGCGTTCGCCCCCGTTGGCCCCGTCAGCTGCCGCCATGACTTCTCTCCCACCCATCACTTCGGCTGTGAACAGCCCCATCAGCAGCATGGGCTCACCCTTCTCGGTCATCAGCTCATCCCTGGGGTCTCCTTGCCTTCCTGGAACTCCCTCGGTGGGCTACGGCCCCATCAGCAGCCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078954_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.426
Domain overlap (PFAM):
C1:
PF118253=Nuc_recep-AF1=PU(0.1=0.0)
A:
NA
C2:
PF118253=Nuc_recep-AF1=PU(67.3=98.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTGAGTTCGACAGCCACC
R:
CTGATGGTGGTGAGGAAACGG
Band lengths:
133-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]