DreEX0063844 @ danRer10
Exon Skipping
Gene
ENSDARG00000002006 | rxrbb
Description
retinoid x receptor, beta b [Source:ZFIN;Acc:ZDB-GENE-990415-242]
Coordinates
chr16:18729979-18731271:+
Coord C1 exon
chr16:18729979-18730090
Coord A exon
chr16:18730893-18730931
Coord C2 exon
chr16:18731071-18731271
Length
39 bp
Sequences
Splice sites
3' ss Seq
TATATTTTCCATATTTTCAGAGA
3' ss Score
8.15
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
TAACAAGGTATTTGTCTGGACGCAAACATTTATGGCGTAAACTGAAAATATAGACGAAACCATGCATTAAAGGACACGAATCGTTGCTGTTGGAGGATTCGGCGTTTGTTGG
Seq A exon
AGATATTTAAGATGAAACGCTTTTGAAATGGTGGATATT
Seq C2 exon
AAGATAATCAAAGATCAACAGTCTCCCCTGTATTGGCCAGTCTAGTGTGCATCTATGAACTCCTTACCGCCCTCCACTTCTGCCGTCAGTAGCCCTGTCAGCTCCGTAGATTCGCCACTGTCAGCCGTCAGCTCGTCCATCGGCTCTCCTGGCGTTCCCGGCACCCCATCCATCGGATATGGACCCATCAGCAACTCTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002006_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.653
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF118253=Nuc_recep-AF1=PU(53.9=98.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTTGCTGTTGGAGGATTCG
R:
TACTGACGGCAGAAGTGGAGG
Band lengths:
123-162
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]