DreEX0063851 @ danRer10
Exon Skipping
Gene
ENSDARG00000005593 | rxrga
Description
retinoid x receptor, gamma a [Source:ZFIN;Acc:ZDB-GENE-980526-36]
Coordinates
chr2:21067741-21097286:+
Coord C1 exon
chr2:21067741-21067839
Coord A exon
chr2:21093363-21093724
Coord C2 exon
chr2:21097081-21097286
Length
362 bp
Sequences
Splice sites
3' ss Seq
CTGTTTACGTTTCTTTCTAGCTC
3' ss Score
9.34
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GCCGTCCAGGACGGCGAAACGAGACAGTTTGCCACTAAACTGGACACTTCTTTCATATTCGTCCAAACATGGATAATAACGACACATATCTCCATCTCA
Seq A exon
CTCTAAATGTGTTTTATAGTGGAATCTTTTTGGATCTCACATTTCATCTGATCTCCAGCCAAGACTGCAAGAAAGTGGCACAACTGTGACTTTGAACAGGCACAGCCAGTCATTCTAAGGATAGATGTTCCATCTGATCAGAATGTGACATTTAGAGGTCATTAATACCACAAGAACTAGCCAGCTCTAGAAGACCACTCTCCAATGACACTCTTGAGTAAGTGTGGCTGCTGAGGATAGCTTTCACAATCTTCACACTGGTCATTCAAGGCATTGCAAAGGAAAGGAAAGAGCAAGAGGCATCACAGGAAAAGAACAGTTGAAAAACAATCGCTCTATAATGCCTTTCAATTGCACCGAGA
Seq C2 exon
GTTCTTCGTTGCAGGTAGCACATGGTCACCTGAGTTCTCCTCCGTCCCAGCCTCCTCTGAGCTCCATGGTGTCGCACCATCACCCATCCATCATCAACGGTCTGGGGTCTCCATACTCAGTCATCACCTCCTCCTCCCTGGGCTCGCCTTCGGCCTCTATGCCCACCACTTCCAACATGGGCTATGGAGCACTCAACAGTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005593_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCAGGACGGCGAAACG
R:
CTGTGGACTGTTGAGTGCTCC
Band lengths:
302-664
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]