DreEX0064340 @ danRer10
Exon Skipping
Gene
ENSDARG00000017010 | scamp2l
Description
secretory carrier membrane protein 2, like [Source:ZFIN;Acc:ZDB-GENE-030131-6432]
Coordinates
chr7:56800184-56801301:+
Coord C1 exon
chr7:56800184-56800285
Coord A exon
chr7:56800391-56800474
Coord C2 exon
chr7:56801184-56801301
Length
84 bp
Sequences
Splice sites
3' ss Seq
TTCTCCTTCATAATCTGCAGGTG
3' ss Score
10.54
5' ss Seq
CTGGTGATC
5' ss Score
0.38
Exon sequences
Seq C1 exon
ATCTGACAGCTCCTTCAGTTTCTTCTTTTTCTTCTTCATCTTCTCATTCCAAGTGATCGTGTACATCATTCAGAGTGTGGGGATCCCCGGCTGGGGAAACAG
Seq A exon
GTGTTGATTTTCCTGGGCTTTCTGTGAGTGTGGGATCTGTTATCTGTAATGACATGGACATCCTCATGGTCATATGCTTTTCTG
Seq C2 exon
TGGCTGGATCACGGCCATCTCGGTGATCAAAACTAACATAGCCTTGTCTGTCTTCATGATGGTGGTGGCTGGATTCTTCACTGTCAATGCCGTGTTCTCTGTTATCTTACTGAAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017010_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.1=100)
A:
PF041448=SCAMP=PD(0.8=33.3)
C2:
PF041448=SCAMP=FE(21.9=100)
Main Inclusion Isoform:
ENSDART00000024076fB5402
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGACAGCTCCTTCAGTTTCT
R:
GTGAAGAATCCAGCCACCACC
Band lengths:
182-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]