DreEX0064395 @ danRer10
Exon Skipping
Gene
ENSDARG00000101557 | scarb1
Description
scavenger receptor class B, member 1 [Source:ZFIN;Acc:ZDB-GENE-031126-1]
Coordinates
chr10:44891577-44899915:+
Coord C1 exon
chr10:44891577-44891723
Coord A exon
chr10:44896791-44896863
Coord C2 exon
chr10:44899019-44899915
Length
73 bp
Sequences
Splice sites
3' ss Seq
AGCTCTGGTTATTCTTTTAGGAC
3' ss Score
8.29
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
AGCGGCTACATCGACGGACCCGTCCTGCACACGTTTCGCACCAATCTGGTGGTTCTGCCAAAGGTCATGGAGTACATGCAGTACATCTTCATCGCTCTCGGCCTCGCTGCCATCCTGACTGCTGTCATATTATTCCTCACCGATAAG
Seq A exon
GACAACGTAAACCATTCAAAACAGCATCCGGCCAATGAGACGCAGGCTGAGAAATATAACCAGAGCAACACAG
Seq C2 exon
GTAAAAAGTAAAACGAGTGGTTCGTCCAGCACAGATGTGGATCCATCCAGCACAACCAGTGAAAAAGCCCCATTACTACAGTCACCAACCAGCTGAACCATCATCCACATTCACAATATTTAAAAGTTCCACAAATAAAGCTTATTTTATTATAACAAGCTGTGGATGATTGGACTGGATCCAGTACAGATGATGCATTATGAACTCTTGTGTGTGTTTTTGTACAGCGGTTGGGTTCTCCATGGAGTTTGCATTACATTTAGCATTGAAAAACTGAGCATCTGTGTTATGGTCTGGGTTAGTTAAATATTTTTATTTTGAAAATACTTGAATATACAAGATTGTGAAATGGTGCACACTAAAATTAAACAACACTGTCTAAACACTCTAATTTCCTACCAGGAAAAAAACTATTCAAAGTTATCCTTTGGTAACCTTTAATCTATTGTAAAAAAAGGAAGTGCCTTGAACATTTTCTGACAATATCGTGCCATTATTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101557_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.900 C2=0.817
Domain overlap (PFAM):
C1:
PF0113016=CD36=PD(39.2=94.0)
A:
NO
C2:
NO
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTTCTGCCAAAGGTCATGG
R:
GGGCTTTTTCACTGGTTGTGC
Band lengths:
168-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]