DreEX0064400 @ danRer10
Exon Skipping
Gene
ENSDARG00000098312 | scarb2
Description
scavenger receptor class B, member 2 [Source:ZFIN;Acc:ZDB-GENE-020419-29]
Coordinates
chr5:52210670-52213547:+
Coord C1 exon
chr5:52210670-52210822
Coord A exon
chr5:52211915-52211962
Coord C2 exon
chr5:52212228-52213547
Length
48 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTGTTCCACTTCAGAAT
3' ss Score
10
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ACAGCAACTATTGATGATGAGTCTGCAGCCCAGATGAGGATGCTCCTGTTAATTGTAACAGTGGTATCCAACTTTCCAGTCATCATTTTGGCATTGGGGGTGATTTTACTTGTAGTCCTTATATTCCTCGTCTGCAGAAACCGCCAGAGAAAG
Seq A exon
AATGAAGTAAAACGTATTGATTTTACTGAAGCTTTTCATTCTTTTGCT
Seq C2 exon
ACAACAAAAGATGAAACTGCTTATACCCAAGTGAGCAACCAAGCAGAGGATTCACCAGAGAACCGCAACAATCAGCCATTGAGGAATGGATCATATATTGCCATGTCACCAGTGGAGGCACAAAAGTGTTGATGAAGATGACCGATGAACTTTCGCCTGAGGACATTATGTCTATTCTCACCATTTTTTAATGTGTTTTACTTTTCATCGCAGCAGTCTTCTTTGGGGGCCAGTCACCACCTTTGGCTGAGGGTCACGCATTTTACTAAAGACTTTTTTCTTTTGTGTTTGTTTGTTTCCTTGAGCATGGCCTTCTCAAACTGCCATATCAAAGCACCCAATTCAGTTTTGTAGAACCAACTCTGGGTTTCCAGAGGCTTCCGTTGCCTATTCCTCAGAGGCCTGAAACACACTCTTGCCTTTTTGAAAACACAAATATGCATTGCATGTTCACAGAGTCGTACACCCTCTGAGCATGAGTGTTCTAGATGGGTGAAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098312_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.488
Domain overlap (PFAM):
C1:
PF0113016=CD36=PD(9.9=88.2),PF151021=TMEM154=FE(53.8=100),PF153451=TMEM51=PU(40.0=62.7),PF122733=RCR=PU(30.4=47.1)
A:
PF151021=TMEM154=FE(16.1=100),PF153451=TMEM51=FE(18.8=100),PF122733=RCR=FE(19.0=100)
C2:
PF151021=TMEM154=PD(15.1=31.8),PF153451=TMEM51=PD(37.5=68.2),PF122733=RCR=PD(46.8=84.1)
Main Skipping Isoform:
ENSDART00000162459fB5409
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAAACCGCCAGAGAAAG
R:
TTTTGTGCCTCCACTGGTGAC
Band lengths:
146-194
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]