DreEX0064675 @ danRer10
Exon Skipping
Gene
ENSDARG00000095515 | sdccag3
Description
serologically defined colon cancer antigen 3 [Source:ZFIN;Acc:ZDB-GENE-060526-242]
Coordinates
chr5:50561936-50562605:-
Coord C1 exon
chr5:50562454-50562605
Coord A exon
chr5:50562182-50562279
Coord C2 exon
chr5:50561936-50562027
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTATCTTTTATTTGCGTTAGGAC
3' ss Score
7.27
5' ss Seq
ATGGTACTT
5' ss Score
5.19
Exon sequences
Seq C1 exon
CGTGAGGTCAGCATTTTTTTCATCATTAGACAGACTACAAACTACATCAGACCTGCAAAAATCTTTCTTCCACATCAATAGATGGCGATGCTGACGATGTTTGCTGTAACTGTTCTTCTTTGCCGAGCCGAAGAAGTGACATGATGACAGCC
Seq A exon
GACTCAAAGTCTTTGGGATTAGCAAGTTTACGTTTCTGGTCAAGTTGTCTAAGCTAACATGTCCAGACACAAGTCGAAAAAGCTCATCATTGAAGATG
Seq C2 exon
ATGAGCCAAAGCAAGATGAGCTGAATCCATTTTCGTTCAAGGAGTTTATCCGAAACAAAAACCAGCCGTCATGTTCCACAGAAGCCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000095515_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.714 C2=0.323
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATAGATGGCGATGCTGACGA
R:
CTCTGTGGCTTCTGTGGAACA
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]