DreEX0064782 @ danRer10
Exon Skipping
Gene
ENSDARG00000099554 | sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050208-274]
Coordinates
chr6:23791421-23797212:-
Coord C1 exon
chr6:23797119-23797212
Coord A exon
chr6:23792762-23792796
Coord C2 exon
chr6:23791421-23791429
Length
35 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTATTTCTTTTTCAGGAC
3' ss Score
11.66
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
GAGTCAACAGCCAACTTTCCTTTCCCTCCTCCTCCTCCCCGGTCCATCCCAAAGACTGAACAGCCCCAATTCAATCCCTTTTCTAAGAGGGCTG
Seq A exon
GACAAATTCAGAATCAACAACAGACCCTGTCACAG
Seq C2 exon
GGTCCCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099554_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]