DreEX0064784 @ danRer10
Exon Skipping
Gene
ENSDARG00000099554 | sec16b
Description
SEC16 homolog B (S. cerevisiae) [Source:ZFIN;Acc:ZDB-GENE-050208-274]
Coordinates
chr6:23827959-23829822:-
Coord C1 exon
chr6:23829528-23829822
Coord A exon
chr6:23828140-23828240
Coord C2 exon
chr6:23827959-23828061
Length
101 bp
Sequences
Splice sites
3' ss Seq
GCAACTGCTAATGCATTCAGGCA
3' ss Score
1.63
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
TTTTTTTTTAGGTTTATCCAGTTCTGTGTCTCATGATGGAGCCCAGAAGGGAAGGCTGGCGCATGCCAGGCTATCAGTACCAATCTAGTGACAGAGATGACCACTACAGATCCTCACATCAATCACAGTATTACTACCCACCAACAGAGTCGAGAGGGAGAGAAAGACAGTGGCAGCAGGTCGATCCTCGTTATGGAAGCTACATGACCAGTCCTCCTCCTAAACCAGAGTATATTCCTGGATATAGCAGCGCTTATGCATCCAACCAACCCTTACACTTCAGACCACACTCCAG
Seq A exon
GCAGGAATATGACTACTCCACTTCCAGCTACTGGCCCTACAGGGAAGACTATGGCTATTATGATTATCACGGTTATCACAGAACACAATACAGCTCTCCAG
Seq C2 exon
ATGGCGGCGGCTGGAGCCAGACAGATGGCTGGAGGACAGAGGGTCATCAGGGCCGAGGACTGACGCAGGAGTCTGCAAGAGCTTCATACTCCGATCAGCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099554_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.852 A=0.314 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAACAGAGTCGAGAGGGAG
R:
TGAAGCTCTTGCAGACTCCTG
Band lengths:
242-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]