DreEX0064980 @ danRer10
Exon Skipping
Gene
ENSDARG00000042138 | selp
Description
selectin P [Source:ZFIN;Acc:ZDB-GENE-110107-2]
Coordinates
chr20:34053971-34054732:-
Coord C1 exon
chr20:34054547-34054732
Coord A exon
chr20:34054253-34054307
Coord C2 exon
chr20:34053971-34054159
Length
55 bp
Sequences
Splice sites
3' ss Seq
GACCAGTTTTTTTTTTGCAGGTC
3' ss Score
8.93
5' ss Seq
AGGGTGGGT
5' ss Score
5.37
Exon sequences
Seq C1 exon
TTGTCCAGTGCCAGCCAGTTGAAAACCCACAGCAAGGTCTTGTGAAGTGTGACGGCGCCTTTGGAGAGTTTAACTTTAACTCATCATGCCAGTTCCAATGTGCCACTGGTTTCAATCTGGTGGGGGCAGAGAGGATACACTGCTTGACAACAGGACATTGGAACGACACCCTTCCTGTTTGTCAGG
Seq A exon
GTCTCTTTCAAATTTTTTGTGAAAAGTACTAATAATTTCTTCTTTTTTTTTCAGG
Seq C2 exon
CTGTCAAATGTCAGGCAATCATTGATGCCCCTCGTGGTTGGACAATGATCTGCACTCATCCGCTTTCCATGAATAGCTTCAACTCCAGCTGTGAGTTTGAGTGTAAGGAGGGTTTTGAGCTCAATGGTTCAAAGACAACCTGGTGTGACCACACTGGCCACTGGACAGACAAAGCCCCCACTTGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042138-'5-5,'5-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=92.1)
A:
NO
C2:
PF0008415=Sushi=WD(100=92.2)
Main Inclusion Isoform:
ENSDART00000061765fB5452
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTCCAATGTGCCACTGGT
R:
CCACGAGGGGCATCAATGATT
Band lengths:
134-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]