DreEX0064982 @ danRer10
Exon Skipping
Gene
ENSDARG00000042138 | selp
Description
selectin P [Source:ZFIN;Acc:ZDB-GENE-110107-2]
Coordinates
chr20:34056568-34059342:-
Coord C1 exon
chr20:34058707-34059342
Coord A exon
chr20:34058394-34058460
Coord C2 exon
chr20:34056568-34056936
Length
67 bp
Sequences
Splice sites
3' ss Seq
GCGTTTCTCACGTTCCTCAGATG
3' ss Score
8.45
5' ss Seq
ATGGTATGT
5' ss Score
8.35
Exon sequences
Seq C1 exon
AACATGAAAAAAATAAGAATCTTTAGTATTTATTTGTTTTTAAGAAAAGCAAGACAATATTTTTGGTATGTCGATTGAAGAGTTGAGATGCAAAAACCTCTAAATGCCATCTGAAAAATTCTTCTGAGCATTTTTGGCAAGCTCCTGTGTGTATGTTCAGTAAATCCACTTTTTTTGGCAAAAAATAGGTTCTTTGCATTGCCTTTAAAGTGAAATAACTAAACAAAAATATTGGAGGCTGAAGAAAAATGCTTATATAGGAGAAAATTTCAGATGGGACTTAAAGGTTTTTGCATCTGAACTCTTCAATTGTCTTTTACAAACAGTTGTGAAATGTGTCCTTTTAATGACAGCGCTATTACACAATTTCCCGTGACTTGTTTCCCATGCAGTGCAACTGTCTAAATAGTAAATCACATTTGACAGTAATTTTGTATGCATTGCTCTGTAAATTTCCTTTCAGATTTCATGCAAATAAAACTGAATTGTGTCAAAAAAAG
Seq A exon
ATGGTTTTGTTGGTGCATATTACTCTATTTTCTGGATCTCTGGTATTTATGACTGGAATGTATAATG
Seq C2 exon
TCAATGCCTGGACTTACCATTACAACATCGACAGTAAGTTGGACTGGACAGCAGCTCGTCAGTGGTGTCAAACGCATTTCACGGATATGGTGGCCATCCAAAACCAGGCAGAAATTGCATACCTCAACGAAATCCTCCCCTTCCATCGGGCATACTACTGGATTGGCATTAGGAAGATTGACGGCCATTGGACATGGGTTGGGACCAAAAAGCGCTTGACCGTCGAAGCAGCAAACTGGGCGACAAATGAACCGAATAACCAGGGGACTGGAGAAGACTGTGTGGAGATTTACATCAAGAGGAACAAAGACACTGCCAAGTGGAACGACGAGAGGTGCAGCAAGAAGAAAGCAACTGTGTGTTATTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042138_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.016
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0005916=Lectin_C=WD(100=90.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTCCCATGCAGTGCAACT
R:
GCTGCTGTCCAGTCCAACTTA
Band lengths:
177-244
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]