DreEX0065253 @ danRer10
Exon Skipping
Gene
ENSDARG00000102889 | sept15
Description
septin 15 [Source:ZFIN;Acc:ZDB-GENE-061103-265]
Coordinates
chr25:12762936-12768583:-
Coord C1 exon
chr25:12768487-12768583
Coord A exon
chr25:12768114-12768125
Coord C2 exon
chr25:12762936-12762987
Length
12 bp
Sequences
Splice sites
3' ss Seq
CTCTTTTCCATGACTGACAGAGG
3' ss Score
5.33
5' ss Seq
TTGGTAAAC
5' ss Score
3.22
Exon sequences
Seq C1 exon
GAGAAGATGCCTCTGGCTGTGGTGGGCAGTAATGTGGTGATTGAAGTCAATGGCAGGAAGGTCAGAGGACGTCAGTACCCCTGGGGTGTGGCAGAAG
Seq A exon
AGGGCATTGTTG
Seq C2 exon
TGGAGAACGGTGAGCACTGTGACTTCACAGTCCTAAGGAATATGCTCATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102889-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0073513=Septin=FE(11.6=100)
A:
PF0073513=Septin=FE(1.4=100)
C2:
PF0073513=Septin=FE(6.1=100)
Main Inclusion Isoform:
ENSDART00000165156fB5473
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGTGGGCAGTAATGTGG
R:
AAGTCACAGTGCTCACCGTTC
Band lengths:
106-118
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]