DreEX0065295 @ danRer10
Exon Skipping
Gene
ENSDARG00000087647 | sept7a
Description
septin 7a [Source:ZFIN;Acc:ZDB-GENE-040426-1008]
Coordinates
chr19:11413824-11425965:-
Coord C1 exon
chr19:11425840-11425965
Coord A exon
chr19:11421631-11421651
Coord C2 exon
chr19:11413824-11418784
Length
21 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTTTTTTTATTTTAGACC
3' ss Score
10.73
5' ss Seq
CATGTAAGT
5' ss Score
8.31
Exon sequences
Seq C1 exon
AACTCACATGCAGGACCTGAAGGATGTGACCAACAATGTCCATTATGAGAACTATCGCAGTAGGAAACTGGCTGCTGTCACTTACAATGGTGTCGACAACAACAAGAACAAAGGTCAACTAACAAA
Seq A exon
ACCTGACACAGTTGAAGGCAT
Seq C2 exon
GAGCCCTCTGGCACAGATGGAGGAGGAGAGGAGAGATCATGTGGCAAAGATGAAGAAGATGGAAATGGAGATGGAGCAGGTGTTCGAGATGAAGGTCAAGGAGAAGATCCAGAAACTCAAAGACTCTGAGGGAGAGGTAACATTTCACAAACACCCAAGGGCTCTATTTTAACGATCTAGGTGCAAAGTCTAAAGCGCTGGGCGCAAAAGCATTGAGGGCATTAAAGCAAAATCCACTTTTGCTATTTTAAGGACAGAAAAATTAAAAGGGTTGTGCTTGTTCTCTTAATGAGTTATGGGTGTCTTTTGAGTATAAGGTGCATTAAACCAATCAGAGTCTCAGCTCACATTCTCTTTAAGAGCCAGCTGCGTCGCACCATTAACTATTTACATGGCGGACTTTGTAAGTGGAAAATCTGAATGGAAAAATCTGAATGCTTCACTAACAAGAAAACGGTTAAACAGACCATCATTCAGCCTTTTTACTTTCACCTTACATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087647-'34-32,'34-31,35-32
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.256 A=1.000 C2=0.740
Domain overlap (PFAM):
C1:
PF0073513=Septin=PD(11.6=74.4),PF0681810=Fez1=FE(25.9=100)
A:
PF0681810=Fez1=FE(4.3=100)
C2:
PF0052915=HlyD=PD(9.9=76.9),PF111573=DUF2937=PD(6.2=46.2)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACTGGCTGCTGTCACTT
R:
GCCACATGATCTCTCCTCTCCT
Band lengths:
109-130
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]