DreEX0065548 @ danRer10
Exon Skipping
Gene
ENSDARG00000041243 | setdb1a
Description
SET domain, bifurcated 1a [Source:ZFIN;Acc:ZDB-GENE-030131-2421]
Coordinates
chr19:9220048-9221876:+
Coord C1 exon
chr19:9220048-9220086
Coord A exon
chr19:9221492-9221590
Coord C2 exon
chr19:9221683-9221876
Length
99 bp
Sequences
Splice sites
3' ss Seq
CCTCATTTTTGTTTGTTTAGTCC
3' ss Score
6.22
5' ss Seq
ACGGTCAGT
5' ss Score
8.02
Exon sequences
Seq C1 exon
AGCCCATGGAGGTGGACACAGCAAAAGATAAAGTGAAAG
Seq A exon
TCCATGACAAACCTTTAGGTGAGAGAAAACTGCCAAATAAACCACATGAAACACCGAAAGATACTCAGAAGAAAATTAGTGAACTAAGGAAAAATGACG
Seq C2 exon
GACAAGAGAGCTCAGGCCCGAAGCGATGCTTTGCCATAAAGTCATTCCAGAGAAGAGTAAAACCACTAGAAAGCACTGAAGCACAGAAAGAAAAAACTAAAACTCCCAAAAACACACGCGGACTGTTCAACGATGAGGACGCTTGTTACATCATTGATGCTCGGCAAGAGGGAAACCTCGGCCGTTATATAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000041243-'22-24,'22-22,23-24
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.354
Domain overlap (PFAM):
C1:
PF0085623=SET=FE(5.2=100)
A:
PF0085623=SET=FE(13.2=100)
C2:
PF0085623=SET=FE(25.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCCATGGAGGTGGACAC
R:
GCGTCCTCATCGTTGAACAGT
Band lengths:
181-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]