DreEX0065573 @ danRer10
Exon Skipping
Gene
ENSDARG00000022996 | setx
Description
senataxin [Source:ZFIN;Acc:ZDB-GENE-070402-1]
Coordinates
chr21:3797987-3801132:+
Coord C1 exon
chr21:3797987-3798162
Coord A exon
chr21:3798266-3798349
Coord C2 exon
chr21:3801040-3801132
Length
84 bp
Sequences
Splice sites
3' ss Seq
CTACTCTTCACCATGTGTAGGCA
3' ss Score
5.92
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
AAAGCAAAGGAGTTTGGCTTCGACCAGTCTCTGATGGCACGGTTATGCAAAAGTCTTCACCCCTCAAACTCAAAACTCCCTCCAATTCTTCTACTCAGTATGCAATACCGCATGCACCCAGACATCTGCGAATTCCCTTCCAAGTACATCTACAACAGCGCACTCAAAAATGACTG
Seq A exon
GCAGGGCCAGTGCAGACAGGAGCAGGAGATTAGGACTGTGTCTGAATTCAGACTCCTCAGGTCATTGAGCGGACCGTGCGTGTG
Seq C2 exon
CGAGACTGCTCAGAAGCGCTGCTCCCTCAGCTGGCCCTTCAAGCCCTACAAAGTGTTTGACGTGATGGATGGCAGAGAGACCAAGGAGAGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022996_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=PD(0.1=0.0),PF130871=AAA_12=PU(27.7=86.4)
A:
PF130871=AAA_12=FE(14.7=100)
C2:
PF130871=AAA_12=FE(15.9=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTCAAACTCAAAACTCCC
R:
ACTTTGTAGGGCTTGAAGGGC
Band lengths:
172-256
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]