DreEX0065586 @ danRer10
Exon Skipping
Gene
ENSDARG00000079414 | sez6b
Description
seizure related 6 homolog b [Source:ZFIN;Acc:ZDB-GENE-110628-3]
Coordinates
chr15:24277582-24454222:+
Coord C1 exon
chr15:24277582-24277997
Coord A exon
chr15:24298319-24298321
Coord C2 exon
chr15:24453518-24454222
Length
3 bp
Sequences
Splice sites
3' ss Seq
GGAAAAAGCCATGCAGATAGCAG
3' ss Score
-11.86
5' ss Seq
CAGGTGTAA
5' ss Score
1.3
Exon sequences
Seq C1 exon
AACGCTAGCACTCGAGAGGCATTTAATCGAGGGCACTATTAGATTATGTACGGTACAAACTTTGCGCGAAGCCTGAAGTTGTTCCAGTTGCTGACGCTAGGAGCTGTCCGCGGTGCTGAAACGGCTCGACTCAGTCTGAGAGGTGCTGACAGAAATTGAACATTCTCTGGCTTCTCCTCCGTCCACAATTACAAATCTGATCAGAGCTGCCCGTTTCGCGTGGCGACCTCTTCTCCTCGCGGAACTCCTGCGTCTTGCTCCTCTTTAATTATTCGGAAAGTGTTTTAATGCAAGGACATATTTTCTGTGAAAGGATCCCACTGCCGTGAGCATGAACTCGACTAGAAATTACAAACCAAGCATGGTCGTTCTGATCCTGGTCGTATTTGCTGGTATTGGGATGGCACGAGGGCAAG
Seq A exon
CAG
Seq C2 exon
GATCCTTAACAGATGGGAGGTTAGCAGTCACCCAAAGAGGAGGTCAGCTAGAAGCAGAGGACGGGTCCAACCCATATCACACCACCCAGGACACAGACAGAGAATTACCCTTGTTCACCACGGCTCCCCCTTACAGTGGCCTCGACCACCATCCGCCTTTTAAGCCCTACCCGCCTTATGACCCACGTGGCCAAAGCCACGGCCAGTATTTTCAGGACAGTGGAGGGGCAGCGCACCATCCCACAATGCCATCCTCCAGTTCCCATCTCCTCCAGGACCCATCTACACAGTTGGTCCCACATGAAGAAGCACTGCCTTTTTCTGATGTAGCGGCTCCCAGAAGCACCACAATGGCTCCATCGGCTGCTGCCCTCACCCAGCCACATGTGCCCAAAATCCAACACAAACTTTCAGTAGAAACGCAGAGAAGAAGTTCAGATCCATCCATTTCTTTGAGCACCACTGATGCGCACACATCTGCACTGCCTGTTTCCAAACACTTAGATAGAGAAGACTTCACTCAAACTTTCAACATCAAGCCACAGGATGTGACTGTAGAGAGAAAGCCCTCTGTTGAACATGATGAATCTCCAGAAAGTGATGTTGATGTAAAAGCATCGTCATCAGTGGCTGGTGATTTGGATGACGAGACCACCACATCCACCATCATCACCACAACGGTCATTACCAACATGCAGACGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079414-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.069 A=0.500 C2=0.956
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSDART00000155502fB5497
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCTGGTATTGGGATGGCAC
R:
CCGTCCTCTGCTTCTAGCTGA
Band lengths:
94-97
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]