DreEX0065587 @ danRer10
Exon Skipping
Gene
ENSDARG00000079414 | sez6b
Description
seizure related 6 homolog b [Source:ZFIN;Acc:ZDB-GENE-110628-3]
Coordinates
chr15:24600146-24609415:+
Coord C1 exon
chr15:24600146-24600245
Coord A exon
chr15:24605483-24605491
Coord C2 exon
chr15:24608443-24609415
Length
9 bp
Sequences
Splice sites
3' ss Seq
GTCTTTTTGCATCCCTGAAGAAC
3' ss Score
6.01
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GGTGCAGGGAAAATCTCTCCGGATGTCCATGTCAACGTCGCCACAGTATGATCACATTAGAGGAGAGTCTGCTTTTGAAAACCCCATTTATGAGACCACG
Seq A exon
AACAATGAG
Seq C2 exon
AGACCTATGATTCAAAGCAGCCACCAGAGGTTCTCTCTAGGATTCTGTTGTAAAGAAAGAGCCTGTAAGGAGAGTTGATCAGCACGGACAAAGCCGAGAAGGTCTGAACCGCTGGATTTAGAGCATCTCCATTTTTAGCGTCTCTCTTTTGTGTTTTTGTTTCCAACATGCACTGGTTTTGTTACATACATAATCCCACCTGGCACAAAATGCAATTATATATGAACACGTGAATTTCTTGAAAATCTGAAAAATGTGTTTTTTGTTTGTCTGATCCGCAGGACACGAGAGAATACGAAGTCTCCATTTAAATAAAACCACGCTTGTTTTAGCATGGAGGACCGCAAGCCTTTCTCTGCCTTGTGGAAGATCTCAGTTCCTCTCACATCTTGTGTAGCCAACTCTGCTCTTAATCTCACCTACCTTCTCATCTTTTTTCCCATCTGCTGTAAATAGCACCTCGCTTCTGAGGACTTCCACAAGCCAAGAGTGTGGACAACATGATATTATTTTTGTAGCGCTTCAATAGCCATGGCCTAGCAGACTTGCTTGTACAGTTTTTACCCGTAATTGAGCCAAATTCAAAAAGGAATTGGATAAAATGACAGGCAATAGGGGAAACCATGATATTTATGTTACTGTTGTCTCTCTTTAAACACTTTTGCTTTTTTTTTACTTGACATTTTTTGACTTGCAACACCCCGAGAGGCTTTGTAAGATTCAAAAAAAGTTGAAATATGAGAAATGGCTGCAATTGTGAAATACAAATGATGTCCATTCTCATTGAAAATGAAGTAATTGCACGATAAATGGTCAGTTATAAAAAATAAAACATTTCATTTTCTGGTGATAATGTGCTTCCATTATAATGGTATACACTACCATTCAAATGTTTGGTGTTTATATGATTATTAAAAGGTGCAGTTGGTTATCTGTCAAAATGCTAACCATTAGCATAATACCAAGGTCACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079414-MICROEX2
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF086935=SKG6=PD(0.1=0.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAACGTCGCCACAGTATG
R:
CCTCTGGTGGCTGCTTTGAAT
Band lengths:
101-110
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]