DreEX0065900 @ danRer10
Exon Skipping
Gene
ENSDARG00000028099 | sh2d3ca
Description
SH2 domain containing 3Ca [Source:ZFIN;Acc:ZDB-GENE-080102-1]
Coordinates
chr10:10296313-10300891:+
Coord C1 exon
chr10:10296313-10296740
Coord A exon
chr10:10298869-10298943
Coord C2 exon
chr10:10300767-10300891
Length
75 bp
Sequences
Splice sites
3' ss Seq
AGGATGTCTTGTATTATCAGTGC
3' ss Score
4.51
5' ss Seq
CTGGTGTGT
5' ss Score
4.96
Exon sequences
Seq C1 exon
GCCTCTGAAACCTTGGTCCTACGCAGCGGCGACTTCCTAGTACGGGACTCCTTGTCAACAGTGGGCGACTATGTCCTGACCTGTCGCTGGCAGCAAGAAGTGATACACTGTCGGATCAGTAAAGTCCTGGTCAAAAGCGGACAAACTAAAATCCAGTACATGCTGGAGAATGAGAGCTTCGATTCTGTCCCCACGCTGGTAAGGCACCACGCTGGTACAGGTCGAGCAGTGTGTCCACGAACAGGAGCCCAGCTGCTGTGTCCGGTGAACCGAACGCTGCCACTGAGGTACCTGGAGGCCACGTTTGCTTTAGCTGGAGGAAGACCTGGATCTGCATATTCACCATCTGCCCAGAGGGGGGCGCATATCAAAAGACGCAGTGTTACTATGACAGATGGACTCACGACAGAGAAGATCATTCCTCACAG
Seq A exon
TGCCGCCCAGCCTACACAGCCAGATGAGCCTCAGACAGTCGAGCCAGAGGTGAAACCAGCGGAGGGCAACAGCTG
Seq C2 exon
CCCTTCCACAGTGCACCATAAGGATGCCATGAGGAACTGTGCCATGAGTATGGATCAGATCCAAGAGTACCGCTGTCCACTGTCCCCTGTGGGGGAAACACCTCAATCCCCTGCCTACAGCGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000028099_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.262 A=1.000 C2=0.767
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(87.3=48.3)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGCATATCAAAAGACGCAG
R:
GGATTGAGGTGTTTCCCCCAC
Band lengths:
178-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]