DreEX0065997 @ danRer10
Exon Skipping
Gene
ENSDARG00000010956 | sh3glb1b
Description
SH3-domain GRB2-like endophilin B1b [Source:ZFIN;Acc:ZDB-GENE-030131-6851]
Coordinates
chr2:16522777-16523300:+
Coord C1 exon
chr2:16522777-16522877
Coord A exon
chr2:16522990-16523001
Coord C2 exon
chr2:16523095-16523300
Length
12 bp
Sequences
Splice sites
3' ss Seq
TCATCTGTTCTCTCAAACAGTCA
3' ss Score
9.49
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
GCCCATCACTTGCGGTGTCTGAATGATTTTGTGGACGCTCAGGCTGCGTATTACGCCCAGTGTTACCAGTATACAGTCAATCTGCAGAAACAGCTGGGCAG
Seq A exon
TCAAACTGCAAT
Seq C2 exon
TTTTCCATCCACGTTCTCTAACAACAATCAGCCGTCTGGCAGCTCGTCCGCCAGTGTGTGCGTACCCACAGCACCACCAGCTGCGTCTCTGCCCGCTCCTCCACCCAGCCAGGCTTCACCTGCTCTCAATGAGCTGCGCAGCTCCTCCGGCACCCGAAAGGCCCGTGTGCTGTATGACTATGACGCCGCCAGCAGCACGGAGCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010956-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.533
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(13.7=100)
A:
PF0311413=BAR=PD(0.1=0.0)
C2:
PF0311413=BAR=PD(0.1=0.0),PF146041=SH3_9=PU(35.3=24.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCTGCAGAAACAGCTGGGC
R:
CTGGTGGTGCTGTGGGTAC
Band lengths:
103-115
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]