DreEX0066007 @ danRer10
Exon Skipping
Gene
ENSDARG00000035470 | sh3glb2b
Description
SH3-domain GRB2-like endophilin B2b [Source:ZFIN;Acc:ZDB-GENE-040426-833]
Coordinates
chr5:31078160-31082863:-
Coord C1 exon
chr5:31082722-31082863
Coord A exon
chr5:31080364-31080375
Coord C2 exon
chr5:31078160-31078288
Length
12 bp
Sequences
Splice sites
3' ss Seq
TGACTCTCTTCATGCTCCAGTTG
3' ss Score
7.44
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
Exon sequences
Seq C1 exon
TACACAGAGGAGAAGCTTGGCCAGGCAGAAAAGACTGAGTTAGATGCCCATCTGGAGAATCTGATCGCTCGAGCAGACTGTACCAAAAACTGGACAGAGAAGATCTTCAGACAGACCGAAGTGCTGCTTCAACCCAACCCAA
Seq A exon
TTGACCAAACTG
Seq C2 exon
GTGCCCGTATTGAGGAGTTCTTCTATGAGAAACTAGACAAAAAGATCCCATCCAGAATCACCAATGCAGAGCTGCTGGGACAGTACATGCAGGATGCAGCGAAAGACTTTGGGCCAGGATCTCCATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035470-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(19.1=100)
A:
PF0311413=BAR=FE(1.4=100)
C2:
PF0311413=BAR=FE(17.5=100)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCGCTCGAGCAGACTGTA
R:
AGAACTCCTCAATACGGGCAC
Band lengths:
102-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]