DreEX0066190 @ danRer10
Exon Skipping
Gene
ENSDARG00000074510 | si:busm1-104n07.3
Description
si:busm1-104n07.3 [Source:ZFIN;Acc:ZDB-GENE-030616-99]
Coordinates
chr8:36336220-36338161:-
Coord C1 exon
chr8:36338049-36338161
Coord A exon
chr8:36337683-36337958
Coord C2 exon
chr8:36336220-36336501
Length
276 bp
Sequences
Splice sites
3' ss Seq
GTCTCTACATTCTTTTTCAGCTA
3' ss Score
9.05
5' ss Seq
CAGGTATGT
5' ss Score
9.8
Exon sequences
Seq C1 exon
AGATTTTTGGGCAAGATTCAGCAGATATTCAGAGCGAGTGAAAATGTCACTGCTTAGGCTTTTCTATGGTCATCTCATATTGACGTTGTCTGTATTAATTGGAGCTGAAACAG
Seq A exon
CTAATGTATATTACAGATACACTTGGATACAATGCATCTCCAGCTCTAAAAATCTTAGTGACATGGTGTTTATTGAGAGCCTTTATTTCAATAAATATCTATTTACACAGTTTAATAGTAATATTGGAAAGTATGTGGGGTTTAGTGAGTACGGCATTAGAAATGCAGAATTTAGGAACAATGACACCAATTTACTGCTTAAAAAAAAAGCTGCGGTGAACAAAGTCTGCAAAAATAATGCTATCAACCATGACAAATTTATTCGCAATAAAGCAG
Seq C2 exon
TGAAACCAAAGGTTAAGCTCACTTTAGTGAAGCCAGCTGGTGGAAGACATCCTGCAGTTTTGATGTGCAGCGCGTATGAATTTTATCCTCCACACATCAGAGTGTACTGGCTGAGAAATGGTGAAGTGATAACCTCTGATGTGACATCAACTATGGAGATGGCTGATGGAGACTGGTATTACCAGATTCACTCTGAGCTGGAGTACAGCCCAAAATCTGGAGAAAGGATCTCATGTGGGATTGAACATGCCAGCTCTAATAAACCCATCATTACAGAGTGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074510_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.032
Domain overlap (PFAM):
C1:
NO
A:
PF0096914=MHC_II_beta=WD(100=81.7),PF056527=DcpS=PU(76.2=68.8)
C2:
PF056527=DcpS=PD(22.6=20.0),PF0765410=C1-set=WD(100=87.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTCATCTCATATTGACGTTGTCT
R:
GAGCTGGCATGTTCAATCCCA
Band lengths:
303-579
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]