DreEX0066348 @ danRer10
Exon Skipping
Gene
ENSDARG00000039852 | si:ch1073-460d17.3
Description
si:ch1073-460d17.3 [Source:ZFIN;Acc:ZDB-GENE-131126-26]
Coordinates
chr2:830021-834488:-
Coord C1 exon
chr2:834422-834488
Coord A exon
chr2:831498-831850
Coord C2 exon
chr2:830021-830116
Length
353 bp
Sequences
Splice sites
3' ss Seq
TATCTGATCTATATATTTAGTGT
3' ss Score
6.21
5' ss Seq
GAGGTATGA
5' ss Score
8.55
Exon sequences
Seq C1 exon
AAGATCTACAGCTGCCCTCAGTGCAGACACACCTTCAGCCCCAGACCTGCTTTATTCAAGAACATAG
Seq A exon
TGTTTGCTGAGATGATGGAGAAGCTGCAGAAGACGAAAGTTTGTGCTGCTGCTGGAGCTGGAGACGTGCAGTGTGACGTGTGCAGAAAACACAGAGCTGTTCAGTCCTGTCTGGTGTGTCTGAACTCTTACTGCCAGACTCACTTTGAGCGCCATGAAGAGTTCCACCCCGGTAAACGGCACACAGTGATCGAAGCCACCGGGAAACTGCAGGACATGATCTGCAAAAAACACCACAAGCTTCTGGAGGTTTTCTGTCGCACTGATCAGATCTGCGTTTGCATGCTGTGCATGGTGGATGAACACAGAAATCACGACACTGTGTCCACTGCATTACAGAGGACGGAGAAAGAG
Seq C2 exon
ACTGAGTTGAAAGAGCTGCAGGTGAAATGCCAACAGAGGATCCTGCAGAAACAGAAAGAGCAGCAGCAGCTGAGAGAAGCCGTGACATCTCATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039852_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.068 C2=0.219
Domain overlap (PFAM):
C1:
PF152271=zf-C3HC4_4=PD(15.2=30.4)
A:
PF042867=DUF445=PU(38.7=94.1),PF0064319=zf-B_box=WD(100=34.7),PF040489=Sec8_exocyst=PU(13.5=15.3)
C2:
PF042867=DUF445=FE(10.8=100),PF040489=Sec8_exocyst=FE(23.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]