DreEX0067095 @ danRer10
Exon Skipping
Gene
ENSDARG00000035821 | si:ch211-173p18.3
Description
si:ch211-173p18.3 [Source:ZFIN;Acc:ZDB-GENE-060503-672]
Coordinates
chr19:40528857-40541295:+
Coord C1 exon
chr19:40528857-40529204
Coord A exon
chr19:40539357-40539608
Coord C2 exon
chr19:40541214-40541295
Length
252 bp
Sequences
Splice sites
3' ss Seq
TTCATTTGCTTCTGTTTCAGGAG
3' ss Score
9.88
5' ss Seq
ATGGTAAAT
5' ss Score
6.41
Exon sequences
Seq C1 exon
GCAGATGGATACTATCAAGTCAGCTAGGAGGAGCGTGTGCTTGCCAAAATGGTCATTACCTGTGCTTGTCCTGGATGCGACAATCGCTATAAAACATTAAGGTTACGCTCGGACTCAAAATTCCACCCTGGTAAATTAACATTCCACAAATTTCCGACGTCTGACCCTGAGCGGCTGAAGTTATGGTTACTCGCACTTGGGCTGGATATCAACACTCCATTAAGTGTACTTGAGACGAGGAGAATCTGTAGTGATCACTTCTCCCCCTTTGATTTTAAAGACACCAAAGGAAGTATAGTTCAACTGAAGTCATGGGCTGTGCCGATGAATTTATCGGAACAATTTGTG
Seq A exon
GAGACTGAGATTGATCCAGAAAGCCAATCAATTGATGACAGCTTTGATTTTGAAGATGAAGAGGCATATTTTGATGATGATGATGATATTCAGTCAACTGTAGGAAGGCAAAAGAACCCCAGATCCTGCCCTGGTGAACGTCTTCAGTCCAGACTCATTTTAACCGTTACAAATCCATCTACTGAACCAACCACACCTCCATCTGTATTTGGCACCTATTATGCTCTTTCTCCCACGTGGTACTACCAAATG
Seq C2 exon
GATGATCCTTCAAAGATTGGACTACACATGGAAGAACCGTTCAATGAAAACGTCAACATGGATTTTGTTGCTAATAAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000035821_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.005 A=0.588 C2=0.718
Domain overlap (PFAM):
C1:
PF054857=THAP=WD(100=98.0)
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTAAGGTTACGCTCGGACTCA
R:
ACGGTTCTTCCATGTGTAGTCC
Band lengths:
292-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]