DreEX0067134 @ danRer10
Exon Skipping
Gene
ENSDARG00000097240 | si:ch211-183b15.1
Description
si:ch211-183b15.1 [Source:ZFIN;Acc:ZDB-GENE-131121-478]
Coordinates
chr10:36899207-36967756:+
Coord C1 exon
chr10:36899207-36899335
Coord A exon
chr10:36927232-36927317
Coord C2 exon
chr10:36967632-36967756
Length
86 bp
Sequences
Splice sites
3' ss Seq
TGATTTGTGGCCTTTCACAGGAC
3' ss Score
8.95
5' ss Seq
AAGGTACTT
5' ss Score
8.4
Exon sequences
Seq C1 exon
ACGTTTGAGGCTGGATCAGACTGAAACTGGATTGTCACATCAGCCGTGGAGGTGTAGAGTCTGAACCGAGGGAGGACACCGCTGTACTGGCCTAGGATGTTGGCTGTGAGGTCATCACCATCATAAATG
Seq A exon
GACCTTTGTGGACTCCAGCAGACCAGTTTGTGGAACGTTAATGAAGGTCTAGTAGGACCCAGGAGAGGCGGCAGTGTGAATACAAG
Seq C2 exon
CGCAGATTTTTCCTTCTTGGTTTGGGATGAGGGAGGACAGGCTCTGACAGCACATGTCTCCCATAGCAACGCAAGAGCTTTAAAGTCCAGCCGTGGCTCTGTCACCCTGTCAAATCAGCGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000097240_MULTIEX1-2/2=1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATTGTCACATCAGCCGTG
R:
GCGTTGCTATGGGAGACATGT
Band lengths:
174-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]